Please refer to Scoping application permissions to specific Exchange Online mailboxes, which can limit your application to only access to the specified mailboxes.
Just use the New-ApplicationAccessPolicy
PowerShell cmdlet to configure access control.
New-ApplicationAccessPolicy -AppId e7e4dbfc-046f-4074-9b3b-2ae8f144f59b -PolicyScopeGroupId EvenUsers@contoso.com -AccessRight RestrictAccess -Description "Restrict this app to members of distribution group EvenUsers."
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