Hi Peter,
Thanks for posting the question on our forum.
According to your description, you deployed some shortcuts via Group Policy on desktop, but the desktop has been redirected to OneDrive, you didn’t want to sync the shortcuts of Group Policy.
It is not feasible to exclude the shortcuts of Group Policy to sync on OneDrive now.
I could understand your feeling, I know that it will be more convenience for you if we can exclude them.
Given the situation, we suggest you submit your idea via UserVoice and hope to provide better products and service for you.
It is the best way to let our related team hear your voice.
Thanks for your understanding.
Qing