Try creating a new view like this:
select a.Reference, a.Description, a.Operation, a.[Operation Description], a.SequenceNumber,
a.Phase as Phase1, a.Hours as Hours1, a.Minutes as Minutes1, a.Seconds as Seconds1,
b.Phase as Phase2, b.Hours as Hours2, b.Minutes as Minutes2, b.Seconds as Seconds2
from MyFirstView a
left join MyFirstView b on b.Reference = a.Reference and b.Operation = a.Operation and b.Phase <> a.Phase
where a.Phase = 'Setup'
or b.Reference is null
Or adjust the existing view.
If it does not work, then give more clear details about your columns.