- Are there any issues with running 2 instances of ADCS in the same AD?
No it's possible as mentioned in the following link AD CS (PKI) – Multiple PKI on a same forest? - Given we use autoenrolled computer certificates, can I just update my group policies to use the new CA?
Nothing to do on GPO settings.
For the switch,You should configure all existing templates to be published by new CA and remove it from old one before uninstall old CA.
I invite you to read this article talking about how you can deploy two CA in same forest :
AD CS (PKI) – Multiple PKI on a same forest?
- Is there much of an advantage (other than saving a bit of configuration time) with doing a migration using the backup and restore settings for ADCS?
https://techcommunity.microsoft.com/t5/itops-talk-blog/step-by-step-migrating-the-active-directory-certificate-service/ba-p/697674
I think the advantage of choosing to keep the same CA name is:
->Keep the same IP and use the same flows that are already open between CA and the clients.
->Keep the old certificates already issued by the old CA Another old certificate
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