Hello @Thomas Justen,
Thank you for posting your query on Microsoft Q&A.
From your description, I understand that after migrating authentication method policies from legacy verification options to modern authentication methods, your global administrator is unable to log in to the tenant.
It appears the admin is being prompted to complete MFA using only the Microsoft Authenticator app, despite having multiple authentication methods configured.
Could you check if the admin has other authentication methods available by clicking "I can't use my Microsoft Authenticator app right now" on the login screen?
Below is a reference screenshot after selecting "I can't use my Microsoft Authenticator app right now".
Please verify if other registered methods are available to complete the login successfully.
If no other methods are available, could you share details about the policies implemented during the migration? Specifically:
Which authentication methods were enabled?
Were any external or Azure authentication methods enabled in the tenant?
If you’re unsure about the options selected during the migration, I’d be happy to connect offline to better understand the scenario.
We can connect offline and discuss further on this.
I hope this information is helpful. Please feel free to reach out if you have any further questions.
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Thanks,
Raja Pothuraju.