Hello @Conor McCarthy
If there is another Global Administrator in Subscription 2, they can re-register MFA for the affected user by following these steps:
1.Go to Microsoft Entra ID https://portal.azure.com/#home in Subscription 2.
2.Select Users and choose the specific user.
3.Click on Authentication methods.
4.Select Revoke multifactor authentication sessions.
5.Then click Require re-register multifactor authentication.
Hope this helps. Do let us know if you have any further queries
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