You just need to download the 64-bit version of the package which is available here:
http://www.microsoft.com/en-us/download/details.aspx?id=6523 (.NET 2.0 x64)
http://www.microsoft.com/en-us/download/details.aspx?id=6041 (.NET 2.0 SP1 x64)
The .NET Framework comes in two flavours - 32-bit for 32-bit operating systems and 64-bit for 64-bit operating systems. Just download and install the right one for your OS.
Hope it helps.