Thanks for asking question! If I am understanding right you want to move App from Windows to Linux, if so, currently its not possible to move the WebApp from Windows based to Linux. As mentioned in this Uservoice feedback " Unfortunately we can’t provide this feature as there are too many internal dependencies for the underlying OS that would make this complex and potentially breaking for solutions. There definitely could be languages that might be supported but they would an edge case."
We really appreciate your feedback/suggestion, so kindly up-vote the Uservoice post -All of the feedback you share there will be monitored and reviewed by the Microsoft engineering teams responsible for building Azure.
You may have to redeploy the App, Also, currently there is a limitation and You can't mix Windows and Linux apps in the same App Service plan.
Please let us know if further query or issue remains.