@shockoMS Thanks for posting in our Q&A.
PEM format is not supported by Intune Trusted Certificate profiles. Currently, Intune Trusted Certificate profiles only support cer, crt.
And even the PEM file format was renamed as .crt or .cer, there is no guarantee that everything will work properly during use. You can try to assign it to the WIFI profile and check if it works.
If you are interested in supporting PEM format, it is suggested to feedback in the UserVoice Page. This is a place to collect customers' requirements and problems. Here is the link:
https://support.microsoft.com/en-us/office/uservoice-pages-430e1a78-e016-472a-a10f-dc2a3df3450a
Thanks for your understanding.
If the answer is the right solution, please click "Accept Answer" and kindly upvote it. If you have extra questions about this answer, please click "Comment".
Note: Please follow the steps in our documentation to enable e-mail notifications if you want to receive the related email notification for this thread.