Genomics Data Lake
The Genomics Data Lake provides various public datasets that you can access for free and integrate into your genomics analysis workflows and applications. The datasets include genome sequences, variant info, and subject/sample metadata in BAM, FASTA, VCF, CSV file formats.
The Genomics Data Lake is hosted in the West US 2 and West Central US Azure region. Allocating compute resources in West US 2 and West Central US is recommended for affinity.
Note
Use of datasets is subject to terms and conditions set by the dataset owners. See the details page for each dataset for applicable terms and conditions.
Datasets
| Datasets | Description |
|---|---|
| Illumina Platinum Genomes | Illumina Platinum Genomes |
| Human Reference Genomes | Human Reference Genomes |
| ClinVar Annotations | ClinVar Annotations |
| SnpEff | SnpEff: Genomic variant annotations and functional effect prediction toolbox |
| gnomAD | gnomAD: Genome Aggregation Database |
| 1000 Genomes | 1000 Genomes |
| OpenCravat | OpenCravat: Open Custom Ranked Analysis of Variants Toolkit |
| ENCODE | ENCODE: Encyclopedia of DNA Elements |
| GATK Resource Bundle | GATK Resource bundle |
| TCGA Open Data | TCGA Open Data |
| Pan UK-Biobank | Pan UK-Biobank |
| ImmuneCODE database | ImmuneCODE database |
| Open Targets dataset | Open Targets dataset |
Next steps
View the rest of the datasets in the Open Datasets catalog.