Azure Health Data Services
An Azure offering that provides a suite of purpose-built technologies for protected health information in the cloud.
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I am using $import operation to import data into Azure FHIR service. I am using ndjson format. Part of my code is below:
def import_data2FHIR(access_token, file_info):
# Azure FHIR service URL
fhir_service_url = "https://<my_fhir_service>.fhir.azurehealthcareapis.com"
# Set up the headers with the token
headers = {
"Authorization": f"Bearer {access_token}",
'Prefer': 'respond-async',
'Content-Type': 'application/fhir+json'
}
# Example FHIR resource (Patient)
fhir_resource = {
"resourceType": "Parameters",
"parameter": [
{
"name": "inputFormat",
"valueString": "application/fhir+ndjson"
},
{
"name": "mode",
"valueString": "InitialLoad",
},
{
"name": "input",
"part": [
{
"name": "url",
"valueUri": file_info["url"]
},
{
"name": "etag",
"valueUri": file_info["etag"]
}
]
}
]
}
# POST the FHIR resource to the FHIR server
response = requests.post(f"{fhir_service_url}/$import", json=fhir_resource, headers=headers)
# Check the response
if response.status_code == 201:
print("Resource created successfully")
print("Response:", response.json())
else:
print("Failed to create resource")
print("Status Code:", response.status_code)
print("Response:", response.json())
if __name__ == "__main__":
access_token = get_token() # I get my access token successfully
file_info = {"url": "https://<my_storage_account>.blob.core.windows.net/tmp-file-system/my-directory/patient-fhir-data-2019Jul10-0903.ndjson",
"etag": "0x8DC9402319782B2"}
import_data2FHIR(access_token, file_info8)
<my_fhir_service> has been already assigned to Contributor and Storage Blob Data Contributor role to <my_storage_account>. But I got status code 202 with error:
Traceback (most recent call last):
File "D:\code_for_python\FHIR_service_import.py", line 112, in <module>
import_data2FHIR(access_token, file_info8)
File "D:\code_for_python\FHIR_service_import.py", line 85, in import_data2FHIR
print("Response:", response.json())
File "D:\anaconda3\envs\Epic\lib\site-packages\requests\models.py", line 978, in json
raise RequestsJSONDecodeError(e.msg, e.doc, e.pos)
requests.exceptions.JSONDecodeError: Expecting value: line 1 column 1 (char 0)
Would you please help how to troubleshoot this issue? I really appreciate your help.