Apologies for any frustration with this issue! Thanks for raising this good question!
The SameSite changes have nothing to do with CORS - is a different concept from cookie handling. It looks like your site has some dependency on cookie flows across different domains. As you have added web.config settings to suppress the new SameSite defaults for forms authN and session state, kindly use the developer console (F12) on the browser and review to see if there are errors showing up about specific cookies being rejected.
What app framework are you leveraging? .NET Core actually implemented more breaking changes around SameSite than plain old ASP.NET did. Kindly let us know your findings from from the developer console for further investigation.