The TS Progress UI only launches if a user is logged in.
If the TS is running, and the BIOS Update process reboots the machine, the TSProgressUI will NOT show on top of the logon screen.
When a user logs on, it will not show the TS Progress UI... UNTIL... the next step in the Task Sequence.
Since this is a Upgrade TS, odds are good that by the time you log back in, the TS is already running and on the Upgrade Step itself, which means, you will NOT see the TS Progress UI until it pops the "Restarting Computer" Dialog.
It should return after the Setup Step is complete, and display any additional items you have in your TS after the upgrade step