Thank you for reaching out.
Yes, this scenario is supported for MSIX-packaged Windows applications. If your goal is to open your Flutter Windows application from an HTTPS link and receive the full URL for navigation, the recommended approach is to use App URI Handlers (Apps for Websites). This allows Windows to launch the installed application when a supported HTTPS link is opened and pass the URL to the application.
For Flutter Windows applications, the Windows side of the application can handle the activation URL and pass it to Flutter. The Flutter app_links documentation also includes Windows MSIX examples for web-to-app linking scenarios.
For more information, please refer to the Microsoft documentation:
Enable apps for websites using app URI handlers.
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