Hello Markus,
First, we cannot use the MBR2GPT to convert non-system disks from MBR to GPT, so you don’t need to consider using the mbr2gpt on ALL of your Harddisks. Windows will recognize your other HDD.
About the Second question, I am not sure. I prefer to yes. UEFI boot needs boot partition must be GPT while other partitions don’t need.
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