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Hi Victor,
Thank you for the detailed information you provided. We understand the inconvenience caused by it. And We’re still glad to help you.
For the save a site as template problem, you may need to allow custom script. As a global or SharePoint admin in Office 365, you can allow custom script as a way of letting users change the look, feel, and behavior of sites and pages to meet organizational objectives or individual needs. If you allow custom script, all users who have "Add and Customize Pages" permission to a site or page can add any script they want. Save Site as Template feature will be affected when custom script is blocked. As shown below:
If you want to allow custom script on a particular site (previously called "site collection") immediately, follow these steps:
- Download the latest SharePoint Online Management Shell.
- Connect to SharePoint Online as a global admin or SharePoint admin in Office 365. To learn how, see Getting started with SharePoint Online Management Shell.
- Run the following command: Set-SPOsite <SiteURL> -DenyAddAndCustomizePages****0 (If you change this setting for a user's OneDrive or a classic team site, it will be overridden by the Custom Script setting in the admin center within 24 hours.)
For more details, you can refer to this article: Allow or prevent custom script.
At the same time, the Site Collection Features this option is only achieved in parent site. Meanwhile, as I mentioned above, please confirm that you have not activated SharePoint Server Publishing Infrastructure in the Site collection Features of the parent site.
For the inheritance question, you mentioned “I deleted were the list of limited access users”, if you delete the limited access users in subsite, these users cannot access parent site, it is by default. As shown below:
Limited access users means that these users can only access this subsite but cannot access the parent site. So even if you stop inheriting permissions, as long as you delete these Limited access users, these users can not access the parent site and the subsite.
Basically the reason Limited Access first shows up on both the parent site as well as the subsite is because to access the subsite, the user will need access to the parent site - this is what makes a user has Limited Access.
If the user has it's Limited Access deleted from the subsite, then he/she would not need to have a Limited Access permission again in the parent site, hence why it is also gone.
For more details, you can refer to this article: Default Permission Levels.
Best Regards,
Sukie