I had the same exact question and did not have any other strings in the registry other than the one first string that points to the x86 Common Files directory. It was after seeing this section in the registry key located at HKEY_LOCAL_MACHINE\SOFTWARE\Microsoft\Windows\CurrentVersion
that the answer to solving this error message just instantly became so clear.
If you go to the registry key located at HKEY_LOCAL_MACHINE\SOFTWARE\Microsoft\Windows\CurrentVersion
For 64 bit systems which is what my setup is, there should be 2 items in that list pointing to the 64bit & 32bit versions of the Common Files directories. In my case, it was just as clear as the message itself that kept saying that it couldn't find the
path to the 64bit Common Files directory. The only entry I had was a string named CommonFilesDir (x86) with the Data field value of C:\Program Files (x86)\Common Files
Simple solution to this weird problem is to create a new String Value by going to the Edit menu to New --> String Value
Name it CommonFilesDir
Then press Enter so it creates the new string value and double click on it so you can type in C:\Program Files\Common Files
Then press OK.
Problem solved!
Continue on doing whatever you were trying to do that kept bringing up this error message to confirm everything is normal again and that message doesn't pop up anymore.