Hi Pip,
I would suggest you to refer to the following article which has steps to convert one type of partition to other.
Windows Setup: Installing using the MBR or GPT partition style
http://technet.microsoft.com/en-us/library/dn336946.aspx
I would also suggest you to refer to the section Can a disk be both GPT and MBR?, What is a Protective MBR? and **Why does the GPT have a Protective MBR?**of the article **** to get the answer why GPT partition disk appears on MBR disk.
Windows and GPT FAQ
http://msdn.microsoft.com/en-us/library/windows/hardware/gg463525.aspx
Let us know about the status of the issue. We would be happy to help you further.