If anyone has this problem later, I found the solution. If you run cmd as administrator, you can format the drive and specify the cluster size manually by typing:
Format X: /A:#### /Q /FS:ExFAT
Where X is the letter of the drive you want to format, #### is the size you want the cluster to be. /Q is if you want to do a quick format, and /FS: specifies the filesystem type. In this case I wrote "Format I: /A:4096 /Q /FS:ExFAT" but you can set the allocation unit size to as low as 512 (bytes) or as high as 32M (megabytes). Type Format /? for more help.