The speeds should be much, much higher regardless of what software you're using. Don't waste your time trying different programs. There's something going on that's killing the transfer speed. Encryption and virus checking are two big factors in slowing down copying. Both of those could still be in play in Safe Mode. Are the drives internal? If one or more drives are connected via USB, then there's a chance of a USB issue. More details are needed. You may want to open a discussion at elevenforum.com. It's a good place for troubleshooting issues like this.
Update: I had exactly the same problem today when I attempted to copy files to and from an external SSD drive on a new computer that only has USB-C ports. I used a USB-A to USB-C adapter to plug in the drive. Transfer rates were ridiculously slow (like 3MB/s). I replaced the cable with a direct USB-C cable (a very short cable made for that drive) and then I got 1.5GB/s read and 680MB/s write. Maybe something similar is happening to you. The cable has to be correct to support high speed date transfers.