It is possible that the consumer groups may become unavailable if the manual failover process affects the availability of the IoT hub or the underlying infrastructure. If the consumer groups are unavailable after a manual failover, the stream analytics job may show an error indicating that the consumer groups have been deleted.
If this occurs again, you can try manually recreating the consumer groups using the Azure portal, Azure IoT Hub REST APIs, or the Azure IoT SDKs and see if it helps. You may also need to reconfigure the stream analytics job to use the newly created consumer groups.
It is important to note that performing a manual failover of an IoT hub can have significant impacts on the availability and performance of the service, and it should only be done as a last resort in the case of an emergency. We recommend using a test IoT hub rather than one running in production.
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