Hello there,
As you are getting the ISO from the official website this should not remove any applications.
Are you using Sysprep?
If you're deploying an image to computers that have identical hardware and devices as the original PC, you can keep devices installed on the computer during system generalization by using an unattend file with Microsoft-Windows-PnpSysprep | PersistAllDeviceInstalls set to true.
Hope this resolves your Query !!
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