That restart API call with a resetScope value of "Full" will do the trick. This will flush the links between source(AAD) and target (Oracle/SCIM) objects. This can only be done for the entire job, not for specific objects.
FWIW, AAD Provisioning expects that it is the primary source/authoritory for the objects it is managing in a connected SCIM app. It sounds like this problem is happening as a result of refreshing dev/test environment data with more accurate data based on some other environment such as prod. If this is also happening in prod then it's likely that some business process manipulating data in the SCIM app is flawed and should be adjusted.