Hello
Thank you for your question and reaching out.
The source code will be compiled into a single assembly for an ASP.NET web application. This is intentional.
We can use "aspnet merge.exe" to combine and manage assemblies and produce an assembly for each folder. To accomplish this, we must utilise the Web Deployment project's "Merge each folder output to its own assembly" option with prefix prefixname (http://msdn.microsoft.com/en-us/asp.net/aa336619.aspx).
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