Thank you for asking this question on the Microsoft Q&A Platform.
It will help to see the details of your conditional access policy, to give you better troubleshooting.
I assume that you follow this guide https://learn.microsoft.com/en-us/mem/intune/protect/create-conditional-access-intune
You can allow access to those resources to your users by making exceptions in your conditional access policy.
Hope this helps!
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