@Sabur Mirza Thanks for posting in our Q&A.
Based on my understanding, it is suggested to try to package the app with its custom configuration and deploy them via win32 app. Please get the silent installation and uninstallation command lines from this app vender.
Or it is suggested to try to deploy this app via intune firstly and then deploy its custom configuration via a PowerShell script.
Hope it will give you some ideas.
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