Edit:
Logging for App Service auth should work by setting FileSystem logging to Verbose - Logging and tracing, and see if this provides some pointers.
Kindly let us know how this goes, we can also engage with you further offline.
Apologies for the delay on this, we wish to engage with you offline for a much closer look, please send an email with subject line “Attn:Ajay” to AzCommunity[at]Microsoft[dot]com with the following details, I will follow-up with you.
1. Referencing this thread,
2. Azure subscription ID,
3. Azure resource name and the time of issue occurrence.
If the answer helped (pointed, you in the right direction) > please click Accept Answer