Hi Estois,
We are working on adding support for Message Encryption for web add-ins: https://learn.microsoft.com/en-us/office/dev/add-ins/outlook/one-outlook
The development of the Outlook JavaScript API used by Outlook web add-ins is focused on closing the gap on scenarios that are only supported by VSTO and COM add-in solutions. This way, users who transition to the Outlook web add-in can continue to have a seamless experience.
Let us know if there are any web add-in platform gaps preventing you from moving your COM add-ins to web at https://aka.ms/DevNewOutlook.