An API that connects multiple Microsoft services, enabling data access and automation across platforms
There is no Graph API endpoint for managing mailbox permissions, or any other Exchange admin action for that matter. Not sure who you've spoken with, but they might want to refresh their knowledge on the Graph...
The only supported method for managing mailbox permissions in bulk is via Exchange Online PowerShell. There is an underlying API that you can call if needed, but that approach is NOT supported in any way by Microsoft, there is no documentation published on it, no throttling guidance, nothing. If that's not a issue for you, here's a sample article which discusses said API: https://www.michev.info/blog/post/2869/abusing-the-rest-api-endpoints-behind-the-new-exo-cmdlets