Hi @Robert Immanuvel ,
The per-user settings are being deprecated and if you've updated to the Authentication methods policy with the group settings, you can remove the legacy authentication methods. With the new authentication methods experience, if you have selected to "ignore legacy policies", the new group settings should take precedence.
Otherwise if you are using only the old per-user MFA methods policy and have the methods registered for the users, the only way to disable them is to remove them as an option in Azure.
Let me know if this is what you are looking for and if you have further questions. Here is the guide that covers how these legacy per-user and new group authentication method settings should be configured. https://learn.microsoft.com/en-us/entra/identity/authentication/how-to-authentication-methods-manage
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