Hi,@Abi
Thanks for posting your question in the Microsoft Q&A forum.
Based on your questions, I will answer them in turn.
1. Can I get rid of connections by deleting migration endpoints and organizational relationships?
Delete Migration Endpoints: Migration endpoints are connection points used during the migration process. Once the migration is complete, you can delete the migration endpoint to ensure that there is no longer a connection to the source tenant.
Deleting Organizational Relationships: Organizational Relationships are used to establish a trust relationship between two tenants in order to share resources. It is a good practice to delete an organizational relationship if there is no longer a need to share any resources with the source tenant.
2. I don't need a cross-tenant mailflow. What should I do to Disable this ?
According to Microsoft's official documentation, each migrated mailbox needs a properly configured source MailUser with a destination address to forward the mail received from the source tenant to the mailbox of the target tenant, so cross-tenant mailflow cannot be disabled for the time being.
If my answer is helpful to you, please mark it as the answer so that other users can refer to it. Thank you for your support and understanding.