Hello @Bjorn Jansen,
Thank you for posting your query on Microsoft Q&A.
From your description, it appears you are attempting to set devices as Microsoft Entra Hybrid joined devices. After syncing from On-prem AD to Entra, only four devices appear as Microsoft Entra Hybrid joined, while the rest are listed as Microsoft Entra Registered.
The Microsoft Entra registered state occurs when users add their accounts to apps on a domain-joined device and accept the prompt to add the account to Windows, registering the device with a Microsoft Entra ID and marking it as Microsoft Entra registered.
You're inquiring whether the system will automatically resolve this issue over time, how long it might take, or what steps should be taken to rectify it.
If devices are not showing as Hybrid in Entra, it indicates that the device object has not properly synced from on-prem AD to Entra. Ensure the devices are within the synced OU.
Remove the Microsoft Entra Registered state, navigate to Settings > Accounts > Access Work or School, select the account, and click Disconnect. Afterward, execute the delta sync command on your Entra connect server to synchronize the device with Entra ID.
Alternatively, log into the device with a synced user account and ensure the device can communicate with a domain controller.
Once the machine is operational, execute dsregcmd /debug /join
in admin mode to join the device to Entra as a Hybrid device.
Execute the Delta sync command in the Microsoft Entra Connect PowerShell window:
Start-ADSyncSyncCycle -PolicyType Delta
Subsequently, verify in Entra devices if the device now appears as a Microsoft Entra Hybrid device.
If you're still stuck on this, you can feel free to send me an email at AzCommunity@microsoft.com referencing this issue with a subject line "ATTN:pothurajur" include a link to the current thread. It may be easier to troubleshoot this if there is more visibility into your full setup.
I hope this information is helpful. Please feel free to reach out if you have any further questions.
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Thanks,
Raja Pothuraju.