Hi Ahmed,
I am not sure there is enough information in here to really help. Maybe some error messages for each problem may help.
However, I do have some concerns about the methods as outlined above. Specifically, where you say "I decided to create a 2nd file server (just in case) using the backup copy of S2 and rename it after restoration" - Depedning on the actual steps you did here, this could be a problem. A 'copy' of a machine and rename could result with 2 servers with the same SID which will confuse authentication. If the renamed server was online at the time of rename (i.e. connected to AD) It may have updated the computer object in AD leaving S2 with no matching computer object in AD.
HTH