Hi Rising Flight,
I understand you want to publish 2 new certifictes, 1x root and 1x issuing CA to your domain. I assume these are not Windows CAs (or at least not windows enterprise CAs).
There are two ways I can think of 'off the top of my head'
Certutil.exe -dspublish
https://learn.microsoft.com/en-us/windows-server/administration/windows-commands/certutil
"-dsPublish
Publishes a certificate or certificate revocation list (CRL) to Active Directory.
Windows Command Prompt
certutil [options] -dspublish CertFile [NTAuthCA | RootCA | SubCA | CrossCA | KRA | User | Machine]
Regsards,
Geoff