Hi,
- On the Server 2016 host, please test if all VMs will disappear after the host reboot. We may create a test VM on Server 2016, then reboot it, check if only replicated VM disappear, or all VMs disappear from the Hyper V manager.
- If all VMs disappear from the Hyper V manager, check if restart the VMMS service could fix the issue:

- Besides, please check if the Server 2016 host is updated, if not, please install the latest windows update on the Server 2016 host. Thanks for your time!
Best Regards,
Anne
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