@shankar431 , The APM alert usually appears if one or more of the agents received contradicting configuration settings for the same application under APM monitoring.
From your description , I know the agent is multi-homed. And it belongs to several management groups and receives the configuration from them, the difference in the settings for the same application can cause a conflict. We can compare the settings and make them match or exclude this agent from the target APM group for one of the management servers.
Hope it can help.
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