Nicolas,
The issue isn't really whether you are personally a home user or not, it's that the device in use is a server, which isn't something the members of these consumer community forums typically deal with.
Though the specific issues with Windows Defender you're experiencing may be quite similar to those on any client PC device from the same era, likely Windows 10, there are differences as well. That's why it's suggested that you go to the commercial Q&A forums instead, since those in that forum would know those differences if any.
Just ask your question there as if you're trying to get a Windows 2016 server running properly again just as you did here, since it doesn't matter whether you're a business or individual user, only that you're trying to fix a badly maintained server for use in the future.
Rob