Hello Mike,
In terms of auto-renew, according tothis article author Tim commented “In regard to the renewal during reboot scenario, this would happen if you have a cert lifetime that's extremely short (more likely your case) or have a renewal period that spans the GPO refresh cycle. Double check the template settings and certificate lifetimes.”
Generally, during the auto-renewal process, a new certificate is issued to replace the expiring one. This doesn't result in duplicate certificates; it's a seamless replacement. The new certificate inherits the same public and private key pair as the old one. This is important to maintain consistency and security.
Also, according to group policy ‘server authentication certificate template’ description, it says if more than one certificate is found, it will utilize the one expires latest.
Thank you,
Karlie Weng