First, your design is off. You have a many to many relationships here. One employee can have access to multiple applications and one application can be used by multiple employees. So you should have three tables here:
tblEmployees: EmployeeID, names, other info about employees
tblApplications: ApplicationID, name other info about apps
tjxEmpApp: EmpAddID (PK Autonumber), EmployeeID (FK), ApplicationID (FK)
The last is referred to as a junction table which models the many to many relationship.
Having a table for each application is not the right design. Neither is using Lookup fields on the table level.
I would have a mainform bound to tbleApplications with a subform bound to tjxEmpApp. On the subform (in Continuous Form mode) you would have a single visible control, a combobox to select an employee.
To create your query you would add all three tables, joining tjxEmpApp to tbleEmployees on EmployeeID and tblApplications on ApplicationID. Right click on the join line between tjxEmpApp and tbleEmployees and select Join properties. Select the option for
ALL from tbleEmployees and matching from tjxEmpApp.
Then add the Employee name and Application name columns. This query will then list all employees with whatever application they have been assigned. If an employee has no app then the Application name column will be blank.