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I found the same issue, pasting a simple 47 row, 3 column table from excel to a custom list in SharePoint online. Using Edge from the latest version of Windows 10 x64. This has not been the case when using quick edit previously.
One of my columns contains a lookup, which I suspect may be the culprit.
A possible workaround, that at least worked in my case, was to first copy only the content of the "Title" column, effectively creating a number of empty items. Then I could paste the remaining columns without any duplicates being created.