@RodolfoMacaraeg-5593 Thank you for reaching out to Microsoft Q&A.
For v2: Application Gateway Pricing | Microsoft Azure (at the bottom of the page) - capacity unit is determined by how much traffic the gateway is processing (throughput, persistent connections, and compute unit). changing the request timeout value should not affect the cost as it wouldn't affect any of the three things that contribute to cost. However, this may effect the performance as the connections remain open for longer. Hope this helps.
Please let us know if you have any further questions and we will be glad to assist you further. Thank you!
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