Hi there,
If clients are using v2 or newer templates, this can be done at the template level. But doing this will trigger all clients to renew early. In the GPO setting where you enabled Auto-Enrollment, did you also check the optional box "Upgrade certificates that use templates"? If so, then in the certtmpl.msc interface, right-click the template you want clients to renew, and select "Reenroll all existing certificate holders".
Make sure the template is only available on the new CA (removed from the old) otherwise the enrollment will randomly choose the CAs to use.
You can also follow the steps as per the thread https://social.technet.microsoft.com/Forums/en-US/23a990ed-6c07-4948-acf1-54aaca82e2d1/force-windows-machines-to-reenroll?forum=winserversecurity
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