No, it will not affect the existing setup as you will be creating a new storage account and authorising this account. The script will create a computer account for you automatically so this new storage account will have a different computer account created for it. I recommend to use computer accounts just note the password expiration setting below. https://learn.microsoft.com/en-us/azure/storage/files/storage-files-identity-ad-ds-enable#run-join-azstorageaccount