Yes. I suggest you try it yourself otherwise I will assume this is working for you? When you run any of the triggershedules related to Application Deployment Evaluations:
{00000000-0000-0000-0000-000000000121} Application manager policy action
{00000000-0000-0000-0000-000000000122} Application manager user policy action
{00000000-0000-0000-0000-000000000123} Application manager global evaluation action
The AppIntentEval.log will only show Evaluating Application policies for Machine
But when you run the Application Deployment Evaluation Cycle from the control panel applet, the AppIntentEval.log will show both
Evaluating Application policies for Machine
Evaluating Application policies for S-1-5-21-1343024091-1383384898-725345543-2900 (Sid for currently logged in User)