Will an application from SCCM have more weight than an Intune application?
After you transition this workload, any available apps deployed from Intune are available in the Company Portal. Apps that you deploy from Configuration Manager are available in Software Center. https://learn.microsoft.com/en-us/mem/configmgr/comanage/workloads#client-apps
do not make the application as required and available to the same group. check if you are into this.
It shouldnt take that long for apps to see it in the company portal if it is deployed in the right way from intune.
Thanks,
Eswar
www.eskonr.com