Hi @Paul Simons ,
Not accessing SCM could indicate an underlying issue with the web worker, especially if it's intermittent. It's definitely an edge case. If see it pretty consistently, I would create a new app service by cloning the existing app or redeploying the code.
To address the underlying issue with this app service, please respond to @VenkateshDodda-MSFT 's private comment above so we can work more closely with you to investigate what's causing this issue with SCM.