Hi,
Never put a SCOM Management or Gateway server in maintenance mode, configuration distribution, the heartbeat feature, and other features for the system might become unreliable.
Here's an important note from the official Microsoft documentation about SCOM maintenance mode:
Reference:
https://learn.microsoft.com/en-us/troubleshoot/system-center/scom/maintenance-mode
If you need to patch your SCOM servers and you do not have any redundancy, then you should simply disable the alert notifications, this way you will not receive any alerts, except for the ones in the Operations Console.
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Best regards,
Leon