I am facing exactly the same situation, Microsoft 365 E3 with Intune license assigned to users, Intune device compliance policies all green at the devices in question, devices onboarded through Company Portal which displays "Compliant", work profile successfully created and devices synchronized multiple times over multiple days but still: Devices are marked incomplete in Entra ID, no MDM linked and Compliance field still N/A.
There's solely Intune configured as MDM, MDM user scope is assigned to one group containing all internal employees with E3 license assigned, no WIP user scope used.
Really frustrating because Conditional Access Policies keep failing as we require compliant devices to access our resources thus our users are locked out.
Are there any news on this issue, is there a fix available, can we expect further investigation at Microsoft?
Thanks!