Hi @Jesse White ,
I got update from internal team.
By product design, SFTP connector Cipher details are not exposed. Hence, we can control them from frontend. It's completely handled by product itself.
I would encourage you to add feedback item for this in below link, if you feel adding this capability helps.
https://feedback.azure.com/d365community/forum/1219ec2d-6c26-ec11-b6e6-000d3a4f032c
Product team closely monitor feedbacks and consider them feature releases.
Hope this helps. Please let us know your comments.