@Linden Thanks for reaching out to Microsoft Q&A. I understand that you are unable to upgrade to ADLS Gen2 storage account due to issues with Blobname being invalid.
I see that if you try to access these files using storage explorer, you cannot find them. Are you able to access them via the Portal or CLI/Powershell?
Get a Blob by Blob Name- Get-AzureStorageBlob -Container "ContainerName" -Blob blob* or
Remove it using Remove-AzStorageBlob:
Remove-AzStorageBlob -Container "ContainerName" -Blob "BlobName"
Please let me know. Thank you!
@Linden Any update?